Getting to Know the MetalPDB

Submitted by Anthony L. Fernandez / Merrimack College on Fri, 07/06/2018 - 11:29
Description

When teaching my advanced bioinorganic chemistry course, I extensively incorporate structures from Protein Data Bank in both my assignments and classroom discussions and mini-lectures.

Orbital Overlap and Interactions

Submitted by Jocelyn Lanorio / Illinois College on Mon, 06/25/2018 - 16:28
Description

This is a simple in-class activity that asks students to utilize any of the given available online orbital viewers to help them identify atomic orbital overlap and interactions. 

Interpreting Reaction Profile Energy Diagrams: Experiment vs. Computation

Submitted by Douglas A. Vander Griend / Calvin College on Sat, 06/23/2018 - 10:56
Description

The associated paper by Lehnert et al. uses DFT to investigate the reaction mechanism whereby a flavodiiron nitric oxide reductase mimic reduces two NO molecules to N2O. While being a rather long and technical paper, it does include several figures that highlight the reaction profile of the 4-step reaction. This LO is designed to help students learn how to recognize and interpret such diagrams, based on free energy in this case. Furthermore, using a simple form of the Arrhenius equation (eq.

Bonding and MO Theory in Flavodiiron Nitrosyl Model Complexes - Foundation Level

Submitted by James F. Dunne / Central College on Fri, 06/22/2018 - 22:31
Description

This acitivty is a foundation level discussion of the Nicolai Lehnert paper, "Mechanism of N-N Bond Formation by Transition Metal-Nitrosyl Complexes: Modeling Flavodiiron Nitric Oxide Reductases".  Its focus lies in discussing MO theory as it relates to Lewis structures, as well as an analysis of the strucutre of a literature paper.

Developing methodology to evaluate nanotoxicology: Use of density.

Submitted by Tori Forbes / University of Iowa on Fri, 06/15/2018 - 17:30
Description

This activity is designed to relate solid-state structures to the density of materials and then provide a real world example where density is used to design a new method to explore nanotoxicity in human health.  Students can learn how to calculate the density of different materials (gold, cerium oxide, and zinc oxide) using basic principles of solid state chemistry and then compare it to the centrifugation method that was developed to evaluate nanoparticle dose rate and agglomeration in solution.

 

The Preparation and Characterization of Nanoparticles

Submitted by Kyle Grice / DePaul University on Wed, 06/13/2018 - 23:23
Description

This is a nanochemistry lab I developed for my Junior and Senior level Inorganic Chemistry course. I am NOT a nano/matertials person, but I know how important nanochemistry is and I wanted to make something where students could get an interesting introduction to the area. The first time I ran this lab was also the first time I made gold nanoparticles ever! 

We do not have any surface/nano instrumentation here (AFM, SEM/TEM, DLS, etc... we can access them at other universities off-campus but that takes time and scheduling), so that was a key limitation in making this lab. 

MetalPDB website

Submitted by Anthony L. Fernandez / Merrimack College on Wed, 05/16/2018 - 12:58
Description

When teaching my advanced bioinorganic chemistry course, I extensively incorporate structures from Protein Data Bank in both my assignments and classroom discussions and mini-lectures. I also have students access structures both in and out of class as they complete assignments.